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Department of Bioproducts and Biosystems

Cellular engineering

The Cellular engineering group, led by Assistant Professor Sesilja Aranko, aims to expand the repertoire of post-translational protein modifications. We develop methods for biomolecular protein-conjugation reactions as well as enzymatic post-translational modifications, including phosphorylations, hydroxylations and glycosylations. The applications of the research range from protein- and peptide-purification technologies to functionalization and cell engineering. We are particularly interested in modifying proteins relevant for biomaterials, including silk- and collagen-proteins, with the aim of developing novel sustainable yet high-performing biomaterials.
Protein kinase 3D model
Image: Sesilja Aranko

Research themes

  • Protein ligases
  • Post-translational modifications in bacteria
  • Microbial production
  • Folding and assembly mechanisms of silk and collagen proteins 
Assembly: Sesilja Aranko. Collagen protein and film, fluorescent silk protein, silk fibers
Composite image: Sesilja Aranko

Examples of ongoing research projects

Functional and water-resistant composite materials from crosslinked non-canonical silks and cellulose (CrossSilk)

In this project, funded by the Research Council of Finland (formerly the Academy of Finland), we aim to improve the water resistance of currently available silk- and cellulose-based biomaterials by mimicking the crosslinking of natural silks and leather. The goal is to design fully biodegradable materials with outstanding mechanical properties in both dry and wet states. We hope that the novel crosslinked silk-CNF composite materials developed in the project can be used as a renewable and biodegradable alternative to replace current plastic- and animal-based materials. 

https://research.aalto.fi/en/projects/crosssilk

From post-translationally modified proteins to functional biomaterials (Pro2Fun)

The goal of this project, funded by the Novo Nordisk Foundation Emerging Investigator grant, is to develop methods to produce post-translationally modified structural proteins, including silks and collagens, in bacteria that cannot make the desired modifications naturally. There is accumulating evidence that the post-translational modifications of proteins are essential for the mechanical properties and functionalities of the resulting materials. Yet, the mechanisms behind how these modifications affect the properties of biomaterials are not fully understood, mainly due to technical limitations. Production in bacteria enables obtaining the proteins in an economical, ethical, and sustainable manner. We use the modified proteins to engineer novel functional biomaterials, which have the potential to substitute current oil- and animal-based alternatives.

Group members

 Sesilja Aranko

Sesilja Aranko

Assistant Professor
T107 Bioproducts and Biosystems
 Nea Möttönen

Nea Möttönen

Doctoral student

Katarina Knuuttila

Master's thesis worker

Ardalan Rahimipour

Master's thesis worker

Mariina Tikka

Master's thesis worker

Safoorah Khanum

Master's thesis worker

Juhani Jokio

Research assistant

Mariel Mylly

Master's thesis worker

Teemu Välisalmi

Staff Scientist (interim)

Laura Ahvenjärvi

master's thesis worker
Cellular engineering research group (March 2025)

Interested in working with us? 

Contact: sesilja.aranko@aalto.fi

Publications

Ruxia Fan, Katarina Knuuttila, Benjamin Schmuck, Gabriele Greco, Anna Rising, Markus B. Linder, A. Sesilja Aranko 2025 Advanced Functional Materials

Ruxia Fan, A. Sesilja Aranko 2024 ChemBioChem

Dmitrii Fedorov, Nelmary Roas-Escalona, Dmitry Tolmachev, Adam L. Harmat, Alberto Scacchi, Maria Sammalkorpi, A. Sesilja Aranko, Markus B. Linder 2024 Small

Mengjie Shen, Daniil Astapov, Dmitrii Fedorov, Teemu Välisalmi, Markus B. Linder, A. Sesilja Aranko 2024 International Journal of Biological Macromolecules

Ruxia Fan, Johanna Hakanpää, Karoliina Elfving, Helena Taberman, Markus B. Linder, A. Sesilja Aranko 2023 Angewandte Chemie - International Edition

Wenwen Fang, Ruxia Fan, A. Sesilja Aranko, Michael Hummel, Herbert Sixta 2023 ACS Sustainable Chemistry and Engineering

Marie Bonneel, Elise Hennebert, A. Sesilja Aranko, Dong Soo Hwang, Mathilde Lefevre, Valentine Pommier, Ruddy Wattiez, Jérôme Delroisse, Patrick Flammang 2022 Matrix Biology

Laura Lemetti, Alberto Scacchi, Yin Yin, Mengjie Shen, Markus B. Linder, Maria Sammalkorpi, A. Sesilja Aranko 2022 Biomacromolecules

Laura Lemetti, Jennifer Tersteegen, Juuso Sammaljärvi, A. Sesilja Aranko, Markus B. Linder 2022 ACS Sustainable Chemistry and Engineering

A. Sesilja Aranko, Hideo Iwaï 2021 Molecules

Hannes M. Beyer, Salla I. Virtanen, A. Sesilja Aranko, Kornelia M. Mikula, George T. Lountos, Alexander Wlodawer, O. H.Samuli Ollila, Hideo Iwaï 2020 International Journal of Molecular Sciences

Mathilde Lefevre, Patrick Flammang, A. Sesilja Aranko, Markus B. Linder, Thomas Scheibel, Martin Humenik, Maxime Leclercq, Mathieu Surin, Lionel Tafforeau, Ruddy Wattiez, Philippe Leclère, Elise Hennebert 2020 Acta Biomaterialia

Jesper S. Oeemig, Hannes M. Beyer, A. Sesilja Aranko, Justus Mutanen, Hideo Iwaï 2020 FEBS Letters

Laura Lemetti, Sami Pekka Hirvonen, Dmitrii Fedorov, Piotr Batys, Maria Sammalkorpi, Heikki Tenhu, Markus B. Linder, A. Sesilja Aranko 2019 European Polymer Journal

Pezhman Mohammadi, A. Sesilja Aranko, Christopher P. Landowski, Olli Ikkala, Kristaps Jaudzems, Wolfgang Wagermaier, Markus B. Linder 2019 Science Advances

Pezhman Mohammadi, Aino Sesilja Aranko, Laura Lemetti, Zoran Cenev, Quan Zhou, Salla Virtanen, Christopher P. Landowski, Merja Penttilä, Wolfgang J. Fischer, Wolfgang Wagermaier, Markus Linder 2018 Communications Biology

Annika Ciragan, Sesilja Aranko, Igor Tascon, Hideo Iwaï 2016 Journal of Molecular Biology

Aino Sesilja Aranko, Alexander Wlodawer, Hideo Iwaï 2014 PROTEIN ENGINEERING DESIGN AND SELECTION

A. Sesilja Aranko, Jesper S. Oeemig, Dongwen Zhou, Tommi Kajander, Alexander Wlodawer, Hideo Iwaï 2014 Molecular BioSystems

Sesilja Aranko, Jesper S. Oeemig, Tommi Kajander, Hideo Iwaï 2013 Nature Chemical Biology

Sesilja Aranko, Jesper S. Oeemig, Hideo Iwaï 2013 FEBS Journal

Sesilja Aranko, Gerrit Volkmanna 2011 BioMolecular Concepts

Edith Buchinger, Finn L. Aachmann, Sesilja Aranko, Svein Valla, Gudmund Skjåk-BræK, Hideo Iwaï, Reinhard Wimmer 2010 Protein Science

Mikko Muona, Sesilja Aranko, Vytas Raulinaitis, Hideo Iwaï 2010 Nature Protocols

A. Sesilja Aranko, Sara Züger, Edith Buchinger, Hideo Iwaï 2009 PloS one

Alena E L Busche, Sesilja Aranko, Mehdi Talebzadeh-Farooji, Frank Bernhard, Volker Dötsch, Hideo Iwaï 2009 Angewandte Chemie

Jesper S. Oeemig, Sesilja Aranko, Janica Djupsjöbacka, Kimmo Heinämäki, Hideo Iwaï 2009 FEBS Letters

Mikko Muona, Sesilja Aranko, Hideo Iwai 2008 ChemBioChem: a European journal of chemical biology
More information on our research in the Aalto research portal.

Infrastructure we use

Opening of the Aalto Bioproduct Centre

Joint research infrastructure of Aalto University and VTT Bioeconomy infrastructure on Finland’s roadmap for research infrastructures 2021–2024

Picture of OtaNano lab equipment.

OtaNano

OtaNano is Finland's national research infrastructure for micro-, nano-, and quantum technologies

Logo in blue on white of the German Electron Synchrotron (DESY) logo

National fundamental research centre in Hamburg, Germany

Color logo for EMBL with a hexagonal abstract image made up of green and red dots

With 28 member states, EMBL has more than 110 independent research groups and service teams covering the spectrum of molecular biology at six sites in Barcelona, Grenoble, Hamburg, Heidelberg, EMBL-EBI Hinxton, and Rome.

Sesilja Aranko.

Considerable Novo Nordisk funding for researcher Sesilja Aranko

Staff Scientist Sesilja Aranko has been awarded the highly competed Emerging Investigator 2023 Grant from Novo Nordisk Foundation for a research project focusing on post-translational modifications in protein-based biomaterials. The grant awarded is 10 million DKK (approx. 1.34M€) for a five-year period.

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